Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity

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Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity

MOTIVATION One of the major features of genomic DNA sequences, distinguishing them from texts in most spoken or artificial languages, is their high repetitiveness. Variation in the repetitiveness of genomic texts reflects the presence and density of different biologically important messages. Thus, deviation from an expected number of repeats in both directions indicates a possible presence of a...

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Binary Decision Diagram (in short BDD) is an efficient data structure which has been used widely in computer science and engineering. BDD-based attack in key stream cryptanalysis is one of the best forms of attack in its category. In this paper, we propose a new key stream attack which is based on ZDD(Zero-suppressed BDD). We show how a ZDD-based key stream attack is more efficient in time and ...

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ژورنال

عنوان ژورنال: Bioinformatics

سال: 2002

ISSN: 1367-4803,1460-2059

DOI: 10.1093/bioinformatics/18.5.679